Stem-loop gma-MIR1513b

Accession

MI0017856

Description

Glycine max gma-MIR1513b precursor miRNA

Literature search

1 open access papers mention gma-MIR1513b
(3 sentences)

Sequence

136988 reads, 409.0 reads per million, 177 experiments

ugcguuuguAAAUCAUGACUUUCUCUUGUAUcucaucugaguauaUGAGAGAAAGCCAUGACUUACacac
...((.(((((.(((((.((((((((((((((((....))).))))))))))))).))))).))))).))

Structure

ugc  u     A     A             -   a 
   gu uguAA UCAUG CUUUCUCUUGUAU cuc u
   || ||||| ||||| ||||||||||||| |||  
   ca aCAUU AGUAC GAAAGAGAGUaua gag c
---  c     C     C             u   u 

Annotation confidence High

Genome context

chr20: 223665-223734 [-]

Mature gma-miR1513b-5p

• Accession: MIMAT0054196
• Description: Glycine max gma-miR1513b-5p mature miRNA
• Sequence: 10 - AAAUCAUGACUUUCUCUUGUAU - 31
• Evidence: experimental ; unknown

Mature gma-miR1513b-3p

• Accession: MIMAT0021008
• Description: Glycine max gma-miR1513b-3p mature miRNA
• Sequence: 46 - UGAGAGAAAGCCAUGACUUAC - 66
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506