Stem-loop gma-MIR4998

Accession

MI0017864

Description

Glycine max gma-MIR4998 precursor miRNA

Literature search

1 open access papers mention gma-MIR4998
(2 sentences)

Sequence

114403 reads, 274.0 reads per million, 176 experiments

aauuugggagaagggcugcggucuaggucgagAGUUUCGUGACUACAACUUCUGaaacgcgucuuauuuaugugaagaugacgugcuuCAGAAGCUGUAGUCACGAAACCCUCgaccuugacggcguccuu
..........((((((.((.(((.((((((((.((((((((((((((.((((((((.((((((...(((....)))...)))))).)))))))).)))))))))))))).)))))))).))).))))))))

Structure

aauuugggag      u  g   u        A              A        a      uua   a 
          aagggc gc guc aggucgag GUUUCGUGACUACA CUUCUGaa cgcguc   uuu u
          |||||| || ||| |||||||| |||||||||||||| |||||||| ||||||   |||  
          uuccug cg cag uccagCUC CAAAGCACUGAUGU GAAGACuu gugcag   aag g
----------      -  g   u        C              C        c      uag   u 

Annotation confidence High

Genome context

Unknown

Mature gma-miR4998-5p

• Accession: MIMAT0021016
• Description: Glycine max gma-miR4998-5p mature miRNA
• Sequence: 33 - AGUUUCGUGACUACAACUUCUG - 54
• Evidence: experimental ; 454 [1], Illumina [2]

Mature gma-miR4998-3p

• Accession: MIMAT0054201
• Description: Glycine max gma-miR4998-3p mature miRNA
• Sequence: 89 - CAGAAGCUGUAGUCACGAAACCCUC - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506