Stem-loop ath-MIR5014a

Accession

MI0017882

Description

Arabidopsis thaliana ath-MIR5014a precursor miRNA mir-5014

Gene
family

RF04241; mir-5014

Sequence

25485 reads, 175.0 reads per million, 185 experiments

auuuuuuacuaUUUGAUUCGUACACUUAGuuuuguacaacauuuuuaguguacaaauaaauaaauguacacagcguacacuuacaucuguacacuaaaaguguuguacaaauuUAAGUGUACGAAUCAAACuaugaaaagu
((((((((...((((((((((((((((((.((((((((((((((((((((((((.((...(((.(((((.....))))).))).)).)))))))))))))))))))))))).))))))))))))))))))...))))))))

Structure

        cua                  u                        a  aaa   a     a 
auuuuuua   UUUGAUUCGUACACUUAG uuuguacaacauuuuuaguguaca au   uaa uguac c
||||||||   |||||||||||||||||| |||||||||||||||||||||||| ||   ||| ||||| a
ugaaaagu   AAACUAAGCAUGUGAAUu aaacauguugugaaaaucacaugu ua   auu acaug g
        auC                  u                        c  --c   c     c 

Annotation confidence High

Genome context

chr1: 24553909-24554049 [+]

Mature ath-miR5014a-5p

• Accession: MIMAT0021047
• Description: Arabidopsis thaliana ath-miR5014a-5p mature miRNA
• Sequence: 12 - UUUGAUUCGUACACUUAG - 29
• Evidence: experimental ; Illumina [2]

Mature ath-miR5014a-3p

• Accession: MIMAT0020518
• Description: Arabidopsis thaliana ath-miR5014a-3p mature miRNA
• Sequence: 114 - UAAGUGUACGAAUCAAAC - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620


2. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176