Accession
MI0017888
Description
Arabidopsis thaliana
ath-MIR5020a precursor miRNA
Sequence
3077
reads,
21.0
reads per million, 173 experiments
aaauaaagcaaaucuaagugagagauaauuaugagugauggccauggcaUGGAAGAAGGUGAGACUUGCAugaaucgugaaucaaaaccuccaugauuaucacugcaAGUCGUACCUUUUUCCUAGCCAUGAuaaucacugaguauuaaaucuuagaucuuguacuauuu
(((((..(((((((((....(((..((((..(.((((((...((((((..(((((((((((.(((((((((((((((((............))))))..))).)))))))).)))))))))))..))))))...)))))).)..))))..)))))))).))))..)))))
(((((..(((((((((....(((..((((..(.((((((...((((((..(((((((((((.(((((((((((((((((............))))))..))).)))))))).)))))))))))..))))))...)))))).)..))))..)))))))).))))..)))))
Structure
aa - agug ga ua g ggc aU A - -- aauca
aaaua gcaa aucua aga uaau u agugau cauggc GGAAGAAGGUG GACUUGCA uga aucgug a
||||| |||| ||||| ||| |||| | |||||| |||||| ||||||||||| |||||||| ||| ||||||
uuuau uguu uagau ucu auua a ucacua GUACCG CCUUUUUCCAU CUGAacgu acu uaguac a
ca c ---- aa ug g auA AU G c au cucca
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chr4: 6791301-6791470 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR5020a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR5020a-5p
| Accession | MIMAT0020524 |
| Description | Arabidopsis thaliana ath-miR5020a-5p mature miRNA |
| Sequence | 50 - UGGAAGAAGGUGAGACUUGCA - 70 |
| Evidence |
experimental
Illumina [1-2] |
Mature ath-miR5020a-3p
| Accession | MIMAT0053909 |
| Description | Arabidopsis thaliana ath-miR5020a-3p mature miRNA |
| Sequence | 108 - AGUCGUACCUUUUUCCUAGCCAUGA - 132 |
| Evidence |
experimental
unknown |
References
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