Stem-loop ath-MIR5024

Accession

MI0017894

Description

Arabidopsis thaliana ath-MIR5024 precursor miRNA

Sequence

ggauauugaaccgaagaucgacgguugagAUGACAAGGCCAAGAUAUAACAaaaagauauuauucuagaagauaaauguuaauauugaaguuuagaaaguuuaacauuuaucuuuuagaauaauauuuucuugCCGUAUCUUGGCCUUGUCAUUucaaccguugaucucugucgaucucu
(((.(((((.(.((.((((((((((((((((((((((((((((((((..(((.(((((((((((((((((((((((((((((..((..........))..))))))))))))))))))))))))))))).)))..)))))))))))))))))))))))))))))))))).)))))).)))

Structure

   u     a c  a                                AA   a                             ua  gaag 
gga auuga c ga gaucgacgguugagAUGACAAGGCCAAGAUAU  CAa aagauauuauucuagaagauaaauguuaa  uu    u
||| ||||| | || ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||  ||     
ucu uagcu g cu cuaguugccaacuUUACUGUUCCGGUUCUAUG  guu uuuuauaauaagauuuucuauuuacaauu  aa    u
   c     - u  -                                CC   c                             ug  agau 

Annotation confidence Not enough data

Genome context

chr1: 16766259-16766438 [-]

Mature ath-miR5024-5p

• Accession: MIMAT0020530
• Description: Arabidopsis thaliana ath-miR5024-5p mature miRNA
• Sequence: 30 - AUGACAAGGCCAAGAUAUAACA - 51
• Evidence: experimental ; Illumina [1-2]

Mature ath-miR5024-3p

• Accession: MIMAT0021048
• Description: Arabidopsis thaliana ath-miR5024-3p mature miRNA
• Sequence: 134 - CCGUAUCUUGGCCUUGUCAUU - 154
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620


2. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176