Stem-loop gma-MIR5038a

Accession

MI0017913

Description

Glycine max gma-MIR5038a precursor miRNA

Sequence

123345 reads, 205.0 reads per million, 178 experiments

ugggcauccauuuuucccaaauuucagaacuguuuuagguugaacuucucuaaauuuucuUGAGAAUUUGGCCUCUGUCCAUGucuaauuauuaauuccaauaauugagAUGGAUAGAGCCCAAAUUCUCAAGagaauuuguagaagcaaa
((((.(........)))))...((((..(((......)))))))(((((.(((((((((((((((((((((.((((((((((.((.(((((((......))))))))).)))))))))).))))))))))))))))))))).)))))....

Structure

ugggcauccauuuuucccaaauuucagaacuguuuuagguugaa     c                     C          G  u       aa 
                                            cuucu uaaauuuucuUGAGAAUUUGG CUCUGUCCAU uc aauuauu  u
                                            ||||| ||||||||||||||||||||| |||||||||| || |||||||   
                                            gaaga guuuaagaGAACUCUUAAACC GAGAUAGGUA ag uuaauaa  u
----------------------------------------aaac     u                     C          g  -       cc 

Annotation confidence High

Genome context

chr9: 30857860-30858010 [+]

Mature gma-miR5038a-5p

• Accession: MIMAT0021063
• Description: Glycine max gma-miR5038a-5p mature miRNA
• Sequence: 61 - UGAGAAUUUGGCCUCUGUCCAUG - 83
• Evidence: experimental ; SOLiD [1], Illumina [2-3]

Mature gma-miR5038a-3p

• Accession: MIMAT0054210
• Description: Glycine max gma-miR5038a-3p mature miRNA
• Sequence: 110 - AUGGAUAGAGCCCAAAUUCUCAAG - 133
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553