Stem-loop gma-MIR396f

Accession

MI0017919

Description

Glycine max gma-MIR396f precursor miRNA

Literature search

25 open access papers mention gma-MIR396f
(144 sentences)

Sequence

10892837 reads, 23697.0 reads per million, 178 experiments

uagcuucuucagcauuucaacuuccaugcuugcuugaacaaguccuguuaugcuuUUCCACAGCUUUCUUGAACUUcuuaugccuaaugcagcuauugauguggcauugaaGUUUAAGAAAAAUGUGGAAAAacaugucaaaucuaggacu
.......(((((((................))).))))..(((((((.((((.(((((((((..(((((((((((((..(((((..((.((.....))))..))))).)))))))))))))..))))))))).)))).......)))))))

Structure

uagcuucuucagcauuucaacuuccaugcuugcuugaaca       ------u    c         GC             uu     ua  g  g 
                                        aguccug       uaug uuUUCCACA  UUUCUUGAACUUc  augcc  au ca c
                                        |||||||       |||| |||||||||  |||||||||||||  |||||  || || u
                                        ucaggau       guac AAAAGGUGU  AAAGAAUUUGaag  uacgg  ua gu a
----------------------------------------       cuaaacu    a         AA             -u     ug  -  u 

Annotation confidence High

Genome context

chr15: 556336-556486 [-]

Mature gma-miR396f-5p

• Accession: MIMAT0021069
• Description: Glycine max gma-miR396f-5p mature miRNA
• Sequence: 56 - UUCCACAGCUUUCUUGAACUU - 76
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gma-miR396f-3p

• Accession: MIMAT0054215
• Description: Glycine max gma-miR396f-3p mature miRNA
• Sequence: 112 - GUUUAAGAAAAAUGUGGAAAA - 132
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972