Stem-loop gma-MIR396g

Accession

MI0017921

Description

Glycine max gma-MIR396g precursor miRNA

Literature search

25 open access papers mention gma-MIR396g
(144 sentences)

Sequence

11872992 reads, 26181.0 reads per million, 178 experiments

augcugugugugugagaucugagcucaauuuuccucucaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUcuuaugcaucuuauaucucuccacuuccagcauuuuaagcccuagaaGCUCAAGAAAGCUGUGGGAGAauauggc
..((((((((((((((((.((((............)))).)))....))))))(((((((((((((((((((.(((((...((...............................))...))))).))))))))))))))))))))))))))

Structure

au       gugugagaucugagcucaauuuuccucucaaguccuggucaugc                   A     uau  aucuuauaucucuc 
  gcugugu                                            uuUUCCACAGCUUUCUUGA CUUcu   gc              c
  |||||||                                            ||||||||||||||||||| |||||   ||              a
  cgguaua                                            AGAGGGUGUCGAAAGAACU Gaaga   cg              c
--       --------------------------------------------                   C     ucc  aauuuuacgaccuu 

Annotation confidence High

Genome context

Unknown

Mature gma-miR396g-5p

• Accession: MIMAT0021071
• Description: Glycine max gma-miR396g-5p mature miRNA
• Sequence: 56 - UUCCACAGCUUUCUUGAACUU - 76
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gma-miR396g-3p

• Accession: MIMAT0054216
• Description: Glycine max gma-miR396g-3p mature miRNA
• Sequence: 124 - GCUCAAGAAAGCUGUGGGAGA - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972