Stem-loop hvu-MIR399

Accession

MI0017933

Description

Hordeum vulgare hvu-MIR399 precursor miRNA

Literature search

9 open access papers mention hvu-MIR399
(248 sentences)

Sequence

ucagaagaacuagguagauuugccaaaggagauuugccgaacuauagguacuguagguagguuuugccaaaaggagauuugccccgaacuaucgguagguuUGCCAAAGGAGAUUUGCCCCGaagaacuua
............(((((((((.((...(((((((((((((......((.......((((((((((........))))))))))))......))))))))))).))...)))))))))))............

Structure

ucagaagaacua         g  aaa  -           acuaua  uacugua          gcc 
            gguagauuu cc   gg agauuugccga      gg       gguagguuuu   a
            ||||||||| ||   || |||||||||||      ||       ||||||||||    
            CCGUUUAGA GG   CC Uuuggauggcu      cc       ccguuuagag   a
auucaagaaGCC         -  AAA  G           aucaag  -------          gaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR399

• Accession: MIMAT0020542
• Description: Hordeum vulgare hvu-miR399 mature miRNA
• Sequence: 102 - UGCCAAAGGAGAUUUGCCCCG - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129