Stem-loop hvu-MIR5052

Accession

MI0017939

Description

Hordeum vulgare hvu-MIR5052 precursor miRNA

Literature search

1 open access papers mention hvu-MIR5052
(2 sentences)

Sequence

uucuaccauaACCGGCUGGACGGUAGGCAUAcacauccuaccgccacaagcaguaacuguagggcucggaucaaugcggaugguuccuucgggucaacggagucaaacgaccuuaucgccauugucugcagcgauaggauguguaugccuaccgccauagcgggugacgguagga
(((((((...(((.(((((.((((((((((((((((((((.(((..((.(((((..(.((((((.((((((((.......))))).(((((......))))).....))))))))).)..))))).))..))).))))))))))))))))))))))..))).)))...)))))))

Structure

       aua   G   --  A                    c   ca  a     aa u      c   ----------------------     au 
uucuacc   ACC GCU  GG CGGUAGGCAUAcacauccua cgc  ca gcagu  c guaggg ucg                      gauca  g
|||||||   ||| |||  || |||||||||||||||||||| |||  || |||||  | |||||| |||                      |||||  c
aggaugg   ugg cga  cc gccauccguauguguaggau gcg  gu uguua  g uauucc agc                      uuggu  g
       cag   g   ua  -                    a   ac  c     cc c      -   aaacugaggcaacugggcuucc     ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR5052

• Accession: MIMAT0020548
• Description: Hordeum vulgare hvu-miR5052 mature miRNA
• Sequence: 11 - ACCGGCUGGACGGUAGGCAUA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129