Stem-loop bdi-MIR408

Accession

MI0017941

Description

Brachypodium distachyon bdi-MIR408 precursor miRNA

Sequence

ggggaggagaCAGGGAUGGAGCAGAGCAUGGgauggggcuaacagcaaaauuacguucguuauuacuuccacuauaugcugugagagcugcugcugcuguguuguugcucccucccCUGCACUGCCUCUUCCCUGGCuccccugc
.(((.((((.((((((.(((((((.(((.((((.(((((.(((((((......................(((........)))(((((....))).)).)))))))))))).)))).))).))).)))))))))).)))))))..

Structure

-g   a    a      U    -   A   U    u     u       aaauuacguucguuauuacuuccacuauaugcugug  -   u 
  ggg ggag CAGGGA GGAG CAG GCA GGga ggggc aacagca                                    ag agc g
  ||| |||| |||||| |||| ||| ||| |||| ||||| |||||||                                    || |||  
  ucc ccuC GUCCCU UCUC GUC CGU cccu ccucg uuguugu                                    uc ucg c
cg   -    G      -    C   A   C    c     -       -----------------------------------g  g   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature bdi-miR408-5p

• Accession: MIMAT0020550
• Description: Brachypodium distachyon bdi-miR408-5p mature miRNA
• Sequence: 11 - CAGGGAUGGAGCAGAGCAUGG - 31
• Evidence: experimental ; Illumina [3]

Mature bdi-miR408-3p

• Accession: MIMAT0027039
• Description: Brachypodium distachyon bdi-miR408-3p mature miRNA
• Sequence: 117 - CUGCACUGCCUCUUCCCUGGC - 137
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443