Stem-loop osa-MIR5071

Accession

MI0017942

Description

Oryza sativa osa-MIR5071 precursor miRNA

Literature search

1 open access papers mention osa-MIR5071
(1 sentences)

Sequence

gaacagaucaaaUCAAGCAUCAUAUCGUGGACAcggcaaccauauacauacccuucauuauagcgugccuuagauugauacccuugauauuguaccucc
........(((((((((.((((.(((..((.((((............................))))))...)))))))...)))))).))).......

Structure

gaacagau   -      --C    U   -GU  A    gcaaccauauaca 
        caa aUCAAG   AUCA AUC   GG CAcg             u
        ||| ||||||   |||| |||   || ||||              
        guu uaguuc   uagu uag   cc gugc             a
-ccuccau   a      cca    -   auu  -    gauauuacuuccc 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

Chr8: 4114004-4114102 [-]

Mature osa-miR5071

• Accession: MIMAT0020551
• Description: Oryza sativa osa-miR5071 mature miRNA
• Sequence: 13 - UCAAGCAUCAUAUCGUGGACA - 33
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129