Stem-loop osa-MIR5072

Accession

MI0017943

Description

Oryza sativa osa-MIR5072 precursor miRNA

Literature search

7 open access papers mention osa-MIR5072
(14 sentences)

Sequence

69 reads, 52 reads per million, 2 experiments

gcugaauagauCGAUUCCCCAGCGGAGUCGCCAaaaaucguguuggcaacuuuuuugacaagucgacaagcacgau
(((.......((((((...(((.(((((.(((((........))))).))))).)))...))))))..))).....

Structure

-----   gaauaga      CCC   C     C     aaa 
     gcu       uCGAUU   CAG GGAGU GCCAa   u
     |||       ||||||   ||| ||||| |||||    
     cga       agcuga   guu uuuca cgguu   c
uagca   -----ac      aca   u     a     gug 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

Chr6: 17458695-17458770 [-]

Mature osa-miR5072

• Accession: MIMAT0020552
• Description: Oryza sativa osa-miR5072 mature miRNA
• Sequence: 12 - CGAUUCCCCAGCGGAGUCGCCA - 33
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129