Stem-loop osa-MIR5072

Accession

MI0017943

Description

Oryza sativa osa-MIR5072 precursor miRNA

Literature search

7 open access papers mention osa-MIR5072
(14 sentences)

Sequence

80228 reads, 1039.0 reads per million, 142 experiments

gcugaauagauCGAUUCCCCAGCGGAGUCGCCAaaaaucguguuggcAACUUUUUUGACAAGUCGACAAGCacgau
(((.......((((((...(((.(((((.(((((........))))).))))).)))...))))))..))).....

Structure

-----   gaauaga      CCC   C     C     aaa 
     gcu       uCGAUU   CAG GGAGU GCCAa   u
     |||       ||||||   ||| ||||| |||||    
     CGA       AGCUGA   GUU UUUCA cgguu   c
uagca   -----AC      ACA   U     A     gug 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

6: 17458695-17458770 [-]

Mature osa-miR5072-5p

• Accession: MIMAT0020552
• Description: Oryza sativa osa-miR5072-5p mature miRNA
• Sequence: 12 - CGAUUCCCCAGCGGAGUCGCCA - 33
• Evidence: not_experimental

Mature osa-miR5072-3p

• Accession: MIMAT0056168
• Description: Oryza sativa osa-miR5072-3p mature miRNA
• Sequence: 48 - AACUUUUUUGACAAGUCGACAAGC - 71
• Evidence: experimental ; unknown

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129