Stem-loop tae-MIR5086

Accession

MI0017949

Description

Triticum aestivum tae-MIR5086 precursor miRNA

Literature search

1 open access papers mention tae-MIR5086
(1 sentences)

Sequence

794 reads, 27.0 reads per million, 152 experiments

acacaaaaucACAUUGGUGGAAGGCGUGGUAaagaaacaaaaucgaugcuucgaaaauguuacuuacaaaagcauuuuggaguuucgauuuuuuuuuuuuuugcacgaCUUCCACCAAUGUGAUUUCgcgc
.(.(.((((((((((((((((((.((((.((((((((.((((((((.(((((.((((((((.........))))))))))))).))))))))...)))))))))))).)))))))))))))))))).).).

Structure

a a a                  G    G        --c        u     g        acu 
 c c aaaucACAUUGGUGGAAG CGUG UAaagaaa   aaaaucga gcuuc aaaauguu   u
 | | |||||||||||||||||| |||| ||||||||   |||||||| ||||| ||||||||   a
 g g UUUAGUGUAACCACCUUC gcac guuuuuuu   uuuuagcu ugagg uuuuacga   c
c c C                  a    -        uuu        u     -        aaa 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1D: 106288641-106288771 [-]

Mature tae-miR5086-5p

• Accession: MIMAT0020558
• Description: Triticum aestivum tae-miR5086-5p mature miRNA
• Sequence: 11 - ACAUUGGUGGAAGGCGUGGUA - 31
• Evidence: not_experimental

Mature tae-miR5086-3p

• Accession: MIMAT0056504
• Description: Triticum aestivum tae-miR5086-3p mature miRNA
• Sequence: 109 - CUUCCACCAAUGUGAUUUC - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129