Stem-loop osa-MIR5074

Accession

MI0017950

Description

Oryza sativa osa-MIR5074 precursor miRNA

Literature search

4 open access papers mention osa-MIR5074
(5 sentences)

Sequence

7787 reads, 73.0 reads per million, 134 experiments

cgucauucggGAAGGCCACCGUCGGGAUCGCcaagucgucgccguccccguccgccgcuucgccgucgccgaagaucgccggagcaccgucgccgccgucgacccgaucuccgcCGCCGCUUCUUCCUCGUCGCCG
.......(((((((((...((.((((((((....((((.((.((....((..((..((((((.((((......)).)).))))))..)).)).)).)).)))).))))).))).))..))..))))).))......

Structure

cgucauu  -     --  CAC  U   -     Ccaa    u  c  uccc  uc  cc      c  -  gc 
       cg gGAAG  GC   CG CGG GAUCG    gucg cg cg    cg  cg  gcuucg cg uc  c
       || |||||  ||   || ||| |||||    |||| || ||    ||  ||  |||||| || ||   
       GC CCUUC  CG   GC gcc cuagc    cagc gc gc    gc  gc  cgaggc gc ag  g
-GCCGCU  U     UU  -CC  c   u     ---c    u  c  ---c  -u  ca      c  u  aa 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

12: 12674516-12674651 [+]

Mature osa-miR5074-5p

• Accession: MIMAT0020559
• Description: Oryza sativa osa-miR5074-5p mature miRNA
• Sequence: 11 - GAAGGCCACCGUCGGGAUCGC - 31
• Evidence: not_experimental

Mature osa-miR5074-3p

• Accession: MIMAT0056169
• Description: Oryza sativa osa-miR5074-3p mature miRNA
• Sequence: 115 - CGCCGCUUCUUCCUCGUCGCCG - 136
• Evidence: experimental ; unknown

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129