Stem-loop bdi-MIR5059

Accession

MI0017951

Description

Brachypodium distachyon bdi-MIR5059 precursor miRNA

Literature search

0 open access papers mention bdi-MIR5059
(0 sentences)

Sequence

uacugaacaaCGGCCUGGGCAGCACCACCAgcuucuccaucgaaguugguacugccgccauagccuccucguccuc
...........(((...(((.(((..(((((((((......)))))))))..))).)))...)))...........

Structure

uacugaacaaC   CUG   A   CC         uc 
           GGC   GGC GCA  ACCAgcuuc  c
           |||   ||| |||  |||||||||   
           ccg   ccg cgu  ugguugaag  a
cuccugcuccu   aua   c   ca         cu 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1: 55078377-55078452 [+]

Mature bdi-miR5059

• Accession: MIMAT0020560
• Description: Brachypodium distachyon bdi-miR5059 mature miRNA
• Sequence: 11 - CGGCCUGGGCAGCACCACCA - 30
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129