Accession
MI0017952
Description
Oryza sativa
osa-MIR5075 precursor miRNA
Literature search
2 open access papers mention osa-MIR5075
(2 sentences)
(2 sentences)
Sequence
4901
reads,
27.0
reads per million, 138 experiments
gucggaggagcgggacgagugcgacgggauggcgaccgucgccggcgacagguuccucgccgugagcggguaccgcacggcgaggcagggcggguucgagcgcgacgccgagugguucgacccggcggcgcgcgcguggcgccgccucgaccgcguccgcgccccucccuccgccgcccacgucguggUCCGCGGCCGCGUCUGGUGCaucgagggcgccgccgugauggaguggcucggcucgcgcggcggguggcgcgaggucggccccucccccccgggccucaaggccggcaccgcccgcgccgucugcgucggcggcggcgagcgcgucgucgucaccggcgccaucgaggacuccgacggcggguccggccgccacgcccucuggguguucgacguaaagaccaagaacuggaccgugguucgcccaccuccagaguucgccggauucgccUUCUCCGUCGCCGCCGUCCGCaucugauccg
..(((((((((((.(((.(((((((((((.(((((......(((((((..(((((((((((((..((((...)))))))))))))..((((((......((((((.(((((((.((((.(.(((((((((((((((.(((((.(......).)))))))))).....((((....(((((.(.(((((((...))))))).)))).))...))))))))))))).).).)))).))))))))))))).((((((((.((..(((((((((.........)))))....)))).)).)))))))).))))))(((((((.((((((((.....)))))))).)))))))..(((((.((((.((.(((((((......))).)))).)).)))).)))))......)))).....(((((..((((.....)))).)))))...)))))))..))))).)).)))))).)))))))))).)))..))))
..(((((((((((.(((.(((((((((((.(((((......(((((((..(((((((((((((..((((...)))))))))))))..((((((......((((((.(((((((.((((.(.(((((((((((((((.(((((.(......).)))))))))).....((((....(((((.(.(((((((...))))))).)))).))...))))))))))))).).).)))).))))))))))))).((((((((.((..(((((((((.........)))))....)))).)).)))))))).))))))(((((((.((((((((.....)))))))).)))))))..(((((.((((.((.(((((((......))).)))).)).)))).)))))......)))).....(((((..((((.....)))).)))))...)))))))..))))).)).)))))).)))))))))).)))..))))
Structure
gu -- - g a - - u ccgucg --------------------------------ca -------------------------------------------------------------ccucgccgugagcggguaccgcacggcgaggca ----------------------------------------------------guucga c g g c - gcgcguggcgccgccucgaccgcguccgcgccccuc cgcc - c u C cgga gga gcgg acg gug cgacgg ga ggcga ccggcga gguu gggcgg gcgcga gccgagu guuc a c cggcggcgc ccuc gc cca g cguggUC |||| ||| |||| ||| ||| |||||| || ||||| ||||||| |||| |||||| |||||| ||||||| |||| | | ||||||||| |||| || ||| | ||||||| G gccu ucu CGCC UGC CGC GCUGCC CU ccgcu ggccgcu ccag ucugcc cgcgcu cggcucg ugag u g gccgccgcg ggag CG GGU C GCGCCGG -- ag a - - C U U ----ua ugagaccuccacccgcuuggugccaggucaagaa aaaugcagcuugugggucucccgcaccgccggccugggcggcagccucaggagcuaccgcggccacugcugcugcgcgagcggcggcggcugcg gcgcccgccacggccggaacuccgggcccccccuccccggcuggagcgcggugggcgg - g g a u ------------------------------------ -cua U - U C
Annotation confidence
Low
Do you think this miRNA is real?
Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].
Genome context
11: 7878336-7878823 [-]
Database links
Mature osa-miR5075-5p
| Accession | MIMAT0056170 |
| Description | Oryza sativa osa-miR5075-5p mature miRNA |
| Sequence | 189 - UCCGCGGCCGCGUCUGGUGC - 208 |
| Evidence |
experimental
unknown |
Mature osa-miR5075-3p
| Accession | MIMAT0020561 |
| Description | Oryza sativa osa-miR5075-3p mature miRNA |
| Sequence | 458 - UUCUCCGUCGCCGCCGUCCGC - 478 |
| Evidence | not_experimental |
References
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