Accession
MI0017953
Description
Brachypodium distachyon
bdi-MIR5060 precursor miRNA
Sequence
1728
reads,
18.0
reads per million, 21 experiments
ggugggcaccgaggcggugcuggaacuggccggcGGUGGACGGCGGAACUGGAACUGCggcggcaagguaagaucuaugcggcagcagguuuggggguggaagucgccggugagaggagugguuccggcggcggugagagcucccaagugcacaaaucuauaugaguugaguuguguUUCGGGACGGAUGAAAAACCUGCCaaguauuuucgaucuucuuguucugcaucucuccuuauuauucuccacgaaaaccugccaaguaugucaaccgcccggcuagcuagagaccgccaaugucgcuuc
...((((((...((((((.((((..((((((((((((.((((((((........)))).((.(((.((......)).))).)).((((((((....(((((.((((((((..............))))))))((.((((((((((....((((((.((..........)).))))))...)))).(((((((((..((....))..))))).)))).........)).)))).)).........)))))..))))))))......)))).)))).))))))))))))..))))))...)).)))).
...((((((...((((((.((((..((((((((((((.((((((((........)))).((.(((.((......)).))).)).((((((((....(((((.((((((((..............))))))))((.((((((((((....((((((.((..........)).))))))...)))).(((((((((..((....))..))))).)))).........)).)))).)).........)))))..))))))))......)))).)))).))))))))))))..))))))...)).)))).
Structure
ggu - cga -g aa - G GCGGAACUGGAACUGCggcggcaagguaagaucuaugcggca gggg agucgccggugagaggagugguuccggcggc u - ucccaagugcacaaaucuauaugaguugaguuguguUUCGG gggc ac ggcggu cugg cuggccgg cGGU GACG gcagguuu gugga gg gaga gc G |||| || |||||| |||| |||||||| |||| |||| |||||||| ||||| || |||| || uucg ug ccgcca gauc gaucggcc gcca cugu cguccaaa caccu cc cucu cg A --c c uaa ga -- c a ------------------------------------augaac --ag ----------------------cuuauuauu u a ucuuguucuucuagcuuuuaugaaCCGUCCAAAAAGUAGGC
Annotation confidence
Low
Do you think this miRNA is real?
Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].
Genome context
5: 10072906-10073211 [-]
Database links
Mature bdi-miR5060-5p
| Accession | MIMAT0056984 |
| Description | Brachypodium distachyon bdi-miR5060-5p mature miRNA |
| Sequence | 35 - GGUGGACGGCGGAACUGGAACUGC - 58 |
| Evidence |
experimental
unknown |
Mature bdi-miR5060-3p
| Accession | MIMAT0020562 |
| Description | Brachypodium distachyon bdi-miR5060-3p mature miRNA |
| Sequence | 178 - UUCGGGACGGAUGAAAAACCUGCC - 201 |
| Evidence | not_experimental |
References
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