Stem-loop bdi-MIR5061

Accession

MI0017954

Description

Brachypodium distachyon bdi-MIR5061 precursor miRNA

Sequence

127 reads, 2.0 reads per million, 19 experiments

aggauaccggugaccgagugagagagagagauagcAAUCAUCGCAUGGCGCUGGGAAGCaaucacacauaguuucuccgguccauuguaUCUGUUCUGUCCUGCUCGGUAccaaauugua
........((((.(((((((.((.(((((((((.((........((((.((((((((((...........))))).)))))))))))))))).)))).)).)))))))))))........

Structure

aggauacc    a       a  g    -     g  AUCAUCGC    C     -     aauc 
        ggug ccgagug ga agag agaua cA        AUGG GCUGG GAAGC    a
        |||| ||||||| || |||| ||||| ||        |||| ||||| |||||    c
        ccAU GGCUCGU CU UCUU UCUau gu        uacc uggcc cuuug    a
auguuaaa    -       C  G    G     -  --------    -     u     auac 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1: 61734973-61735092 [+]

Mature bdi-miR5061-5p

• Accession: MIMAT0056985
• Description: Brachypodium distachyon bdi-miR5061-5p mature miRNA
• Sequence: 36 - AAUCAUCGCAUGGCGCUGGGAAGC - 59
• Evidence: experimental ; unknown

Mature bdi-miR5061-3p

• Accession: MIMAT0020563
• Description: Brachypodium distachyon bdi-miR5061-3p mature miRNA
• Sequence: 90 - UCUGUUCUGUCCUGCUCGGUA - 110
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129