Stem-loop osa-MIR5076

Accession

MI0017955

Description

Oryza sativa osa-MIR5076 precursor miRNA

Literature search

1 open access papers mention osa-MIR5076
(4 sentences)

Sequence

12 reads, 17 reads per million, 2 experiments

caucugaucccagccuucuauugcuuuauuuucagucaauucaucuacuuguguaagaagaguagaguuugaguaucuagcaggguugaguauacauuugccaaauaauuuugcuguuauugaacuuaucuauauuuauacuaugccaaugaauucgaauuuuugaccuuuucucuccagcaugacucucuugacucGAAAUGGGAGCAGAGCAGGUUUgaaaaaagau
.((((......(((((.((.(((((((..((((((((((....((...(((.(..(((((((.(((((((((((.((..(((((..((((((((.((..(...((((((......))))))...)..)).))))))))..)).)))....)))))))))))))....)))))))..))))...)).....)))))).))))..))))))))).))))).......))))

Structure

c    -gauccc     u  a       au    -      -uuca  uac   u ua       ---u           a  --ua   -  gu        c  uu cca      uu 
 aucu       agccu cu uugcuuu  uuuc agucaa     uc   uug g  agaagag    agaguuugagu uc    gca gg  ugaguaua au  g   aauaau  u
 ||||       ||||| || |||||||  |||| ||||||     ||   ||| |  |||||||    ||||||||||| ||    ||| ||  |||||||| ||  |   ||||||   
 uaga       UUGGA GA GACGAGG  AAAG ucaguu     ag   gac c  ucuuuuc    uuuuaagcuua ag    cgu uc  auuuauau ua  c   uuauug  g
-    aaaaagU     C  -       GU    c      cucuc  uac   - uc       cagu           -  uaac   a  au        c  uu aag      uc 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

Chr1: 43208622-43208850 [-]

Mature osa-miR5076

• Accession: MIMAT0020564
• Description: Oryza sativa osa-miR5076 mature miRNA
• Sequence: 198 - GAAAUGGGAGCAGAGCAGGUUU - 219
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129