Stem-loop tae-MIR5084

Accession

MI0017957

Description

Triticum aestivum tae-MIR5084 precursor miRNA

Literature search

1 open access papers mention tae-MIR5084
(1 sentences)

Sequence

4042 reads, 87.0 reads per million, 208 experiments

aaaaaagggguuuagaUCCUCUGCAGUACCGUAUGGUGcuguaguauggauaacauguggggccaggucucaccuggcagugacuguacaacaucAUACAGUACUGCAGAGGAUCCUAAccccuuaaaa
....((((((((..(((((((((((((((.((((((((.(((..........(((.((.(.(((((((...)))))))..).)))))))).)))))))).)))))))))))))))..))))))))....

Structure

aaaa        ua               C        c   aguauggaua   u  g -g       c 
    aagggguu  gaUCCUCUGCAGUAC GUAUGGUG ugu          aca gu g  gccaggu  
    ||||||||  ||||||||||||||| |||||||| |||          ||| || |  ||||||| u
    uuccccAA  CUAGGAGACGUCAUG CAUAcuac aca          ugu ca u  cggucca  
aaaa        UC               A        a   ----------   -  g ga       c 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1A: 219935406-219935534 [+]

Mature tae-miR5084-5p

• Accession: MIMAT0056505
• Description: Triticum aestivum tae-miR5084-5p mature miRNA
• Sequence: 17 - UCCUCUGCAGUACCGUAUGGUG - 38
• Evidence: experimental ; unknown

Mature tae-miR5084-3p

• Accession: MIMAT0020566
• Description: Triticum aestivum tae-miR5084-3p mature miRNA
• Sequence: 96 - AUACAGUACUGCAGAGGAUCCUAA - 119
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129