Stem-loop tae-MIR5085

Accession

MI0017958

Description

Triticum aestivum tae-MIR5085 precursor miRNA

Literature search

2 open access papers mention tae-MIR5085
(19 sentences)

Sequence

272 reads, 5 reads per million, 105 experiments

uaaagugaaaAAGGACAUUUUUUGUGGCCUGuguaaaaaagacaauuuucgacgcuuaauuacaacuauucacgaggcauuuuuuuaucuuuuuauacaugccacaaacaaugucccuuuucaccgaa
....(((((((.(((((((.((((((((.((((((((((.((.((.....((.((((.................)))).))...)).)))))))))))).)))))))).))))))).)))))))....

Structure

uaaa       A       U        C          a  c  uuuuc  c    aauuaca 
    gugaaaA GGACAUU UUUGUGGC UGuguaaaaa ga aa     ga gcuu       a
    ||||||| ||||||| |||||||| |||||||||| || ||     || ||||       c
    cacuuuu ccuguaa aaacaccg acauauuuuu cu uu     uu cgga       u
aagc       c       c        u          -  a  --uuu  a    gcacuua 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

7B: 228951380-228951507 [+]

Mature tae-miR5085

• Accession: MIMAT0020567
• Description: Triticum aestivum tae-miR5085 mature miRNA
• Sequence: 11 - AAGGACAUUUUUUGUGGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129