Stem-loop bdi-MIR5064

Accession

MI0017962

Description

Brachypodium distachyon bdi-MIR5064 precursor miRNA

Sequence

ucaacgccagcugaugccauggcuucaaguacaccgaaugcuuucuccaucuugccgacuaagccauauccaucaaucagugaauuaaauguaauaacguugggucuuucaccuauauguauaaccaagucaaagauauccugugcauccacaacucuuccuucuuugcauagacuguuuauuauugaacugaagaacgcaauguuaggacaaggaaugccucugcucaucauuucagaaaccaacuccuucgcuuuaaccaaauuaccauacauacaaaaccgcugaauaagggagugauaaacaauuccguucgguuuuagucccauagcaaucaucugguCGAAUUUGUCCAUAGCAUCAGccagccgacc
.....((..((((((((.((((...(((((.(((((.(((...........((((.(((((((((...........((((((.......(((..((((((((.((.(((((.............................(((((((...................)))))))...(((((....)))))))))).)).))))))))..)))((((.((..((((..........))))...))..))))................................))))))..((.(((((........))))).)).)).))))))).....)))).))).)))).).))))).)))).))))))))..)).....

Structure

ucaac  ca        c    cuu     a -    a   cuuucuccauc    ----c       -  ----------------auauccaucaa      ---------------------------------------------------------------aauuaaa   aa        g  c     ccuauauguauaaccaagucaaagauauccugugcauc 
     gc  gcugaugc augg   caagu c accg aug           uugc     gacuaag cc                           ucagug                                                                      ugu  uaacguug gu uuuca                                      c
     ||  |||||||| ||||   ||||| | |||| |||           ||||     ||||||| ||                           ||||||                                                                      |||  |||||||| || |||||                                      a
     cg  cGACUACG UACC   GUUUA G uggu uac           aacg     cugauuu gg                           agucgc                                                                      aca  auuguaac ca gaagu                                      c
ccagc  ac        A    --U     A C    c   ----------u    auacc       u  cuugccuuaacaaauagugagggaaua      caaaacauacauaccauuaaaccaauuucgcuuccucaaccaaagacuuuacuacucgucuccguaagga   gg        g  a     caaguuauuauuugucagauacguuucuuccuucucaa 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

2: 38751727-38752100 [+]

Mature bdi-miR5064

• Accession: MIMAT0020571
• Description: Brachypodium distachyon bdi-miR5064 mature miRNA
• Sequence: 344 - CGAAUUUGUCCAUAGCAUCAG - 364
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129