Stem-loop bdi-MIR5065

Accession

MI0017963

Description

Brachypodium distachyon bdi-MIR5065 precursor miRNA

Sequence

486 reads, 4.0 reads per million, 21 experiments

ugaaaaaggcuaggcaauucacuuauacacuaugauAUUCAGAACUAGCAGUGUACAAGAcaaauugaaucgugauuuaaauaugcaguccuauaaaauuaggacuaaauugacacccuagaacucuaguucuuucucguuccuuguuuugcuucaucauuuuuguuaguguaguucucugccaguuucau
(((((..(((.(((.((((((((.(((....(((((.....((...(((((...(((((.....((((((....))))))......(((((((......))))))).....(((.....(((((....))))).....))).))))).))))))))))))...))).)))).)))).))))))..))))).

Structure

-     aa   u   c    -    u   cacu     AUUCA  ACU     UGU     Acaaauugaaucgugauuuaaauaugcaguccuauaaaauuaggacuaaauu   acccu     u 
 ugaaa  ggc agg aauu cacu aua    augau     GA   AGCAG   ACAAG                                                    gac     agaac c
 |||||  ||| ||| |||| |||| |||    |||||     ||   |||||   |||||                                                    |||     |||||  
 acuuu  ccg ucu uuga guga ugu    uacua     cu   ucguu   uguuc                                                    uug     ucuug u
u     ga   -   c    u    u   -uuu     -----  ---     --u     ---------------------------------------------------c   cucuu     a 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

3: 59067940-59068130 [-]

Mature bdi-miR5065-5p

• Accession: MIMAT0020572
• Description: Brachypodium distachyon bdi-miR5065-5p mature miRNA
• Sequence: 37 - AUUCAGAACUAGCAGUGUACAAGA - 60
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129