Stem-loop bdi-MIR5067

Accession

MI0017967

Description

Brachypodium distachyon bdi-MIR5067 precursor miRNA

Sequence

1406 reads, 17.0 reads per million, 21 experiments

UACUCCCUCCGAUCCAUAuuauuugccgcugauuuagugcaacuuuguacuaaaUCAGCGACAACUAAUAUGGAUaggagggagua
((((((((((.((((((((((.(((.(((((((((((((((....))))))))))))))).))).)))))))))).))))))))))

Structure

          G          u   c               a 
UACUCCCUCC AUCCAUAuua uug cgcugauuuagugca c
|||||||||| |||||||||| ||| |||||||||||||||  
augagggagg UAGGUAUAAU AAC GCGACUaaaucaugu u
          a          C   A               u 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1: 20615436-20615521 [+]

Mature bdi-miR5067-5p

• Accession: MIMAT0056988
• Description: Brachypodium distachyon bdi-miR5067-5p mature miRNA
• Sequence: 1 - UACUCCCUCCGAUCCAUA - 18
• Evidence: experimental ; unknown

Mature bdi-miR5067-3p

• Accession: MIMAT0020576
• Description: Brachypodium distachyon bdi-miR5067-3p mature miRNA
• Sequence: 55 - UCAGCGACAACUAAUAUGGAU - 75
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129