Stem-loop osa-MIR5079a

Accession

MI0017969

Description

Oryza sativa osa-MIR5079a precursor miRNA

Literature search

1 open access papers mention osa-MIR5079a
(3 sentences)

Sequence

29448 reads, 125.0 reads per million, 139 experiments

uuucuuauaaUUUGGAUCUGUUAUUUUGGUAUcaaucuauuaggaauagguuuacauaguuaugguucauuuacauuacccaucuaaaugauuacauaacauaaaaccuuaaugaaauggaaaaaacuuccauuuuuguguuugauuugagaaccccuugaacgccuucucaaaggguucucaaaaauucgagauagaucuaauuagacucuuuuacuuuuuucugaauuuuuuaguauuuccacuauggaauauagaGCGGACUAGUAGAAGAAAAaaaauccuauuuaggauaauaauuggauaacagagccucuacccugucaacggauagcgagagaacaaaaucuggauaaauaccgauuccuauuacugguaaaaagauacagauuaaaagaaagaguuc
.(((((....(((.(((((((.(((((..(((((...((.(((((((.(((.......((((((..(((((((...........)))))))...)))))).............(((((((((.....)))))))))(((.((((((((((((((((.((((........)))).)))))))))))...)))))))).(((((((((...(((((((((...(((((.(((((.((((......)))).))))).)))))......)))))))))......(((((....)))))..)))))))))..((((..((((.(.(((((....))))).))))).......)))).......))).))))))).)).)))))..)))))))))))).)))..)))))...

Structure

--u     auaa   G       U     GG     auc  u       a   uuacauaguuaugguucauuuacauuacccaucuaaaugauuacauaacauaaaaccuuaaugaaauggaaaaaacuuccauuuuuguguuugauuugagaaccccuugaacgccuucucaaaggguucucaaaaauucgagauag         -------------------gac         ---uuu     a     u    au 
   uucuu    UUU GAUCUGU AUUUU  UAUca   ua uaggaau ggu                                                                                                                                                  aucuaauua                      ucuuuuacu      uucug auuuu uagu  u
   |||||    ||| ||||||| |||||  |||||   || ||||||| |||                                                                                                                                                  |||||||||                      |||||||||      ||||| ||||| ||||   
   gagaa    aaa uuagaca uagaa  auggu   au auccuua cca                                                                                                                                                  uagguuaau                      AGAAGAUGA      Gagau uaagg auca  u
cuu     --ag   a       -     aa     --c  u       g   ---------------------------------------------------------------------------------------------uaaauaggucuaaaacaagagagcgauaggcaacugucccaucuccgagacaa         aauaggauuuauccuaaaaAAA         UCAGGC     a     u    cc 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

6: 28181408-28181813 [+]

Mature osa-miR5079a-5p

• Accession: MIMAT0020578
• Description: Oryza sativa osa-miR5079a-5p mature miRNA
• Sequence: 11 - UUUGGAUCUGUUAUUUUGGUAU - 32
• Evidence: not_experimental

Mature osa-miR5079a-3p

• Accession: MIMAT0056172
• Description: Oryza sativa osa-miR5079a-3p mature miRNA
• Sequence: 259 - GCGGACUAGUAGAAGAAAA - 277
• Evidence: experimental ; unknown

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129