Stem-loop osa-MIR5080

Accession

MI0017970

Description

Oryza sativa osa-MIR5080 precursor miRNA

Literature search

1 open access papers mention osa-MIR5080
(1 sentences)

Sequence

277 reads, 3.0 reads per million, 64 experiments

acacacauaccugcaggaguggUUACUUUGAAGAAACGUGaguucaggacauugaagcAAAAGGAUCAUACCGUGACAGaguaucuuca
......(((((((((((.((((((.((((.............(((((....)))))...)))))))))).)).)).))).)))).....

Structure

acacac    -   -  -  a      A    GAAGAAACGUGag     g 
      auac cug ca gg guggUU CUUU             uucag a
      |||| ||| || || |||||| ||||             |||||  
      uaug GAC GU CC UACUAG GAAA             aaguu c
-acuuc    a   A  G  A      -    ----------Acg     a 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

10: 2322020-2322108 [-]

Mature osa-miR5080-5p

• Accession: MIMAT0056173
• Description: Oryza sativa osa-miR5080-5p mature miRNA
• Sequence: 23 - UUACUUUGAAGAAACGUG - 40
• Evidence: experimental ; unknown

Mature osa-miR5080-3p

• Accession: MIMAT0020579
• Description: Oryza sativa osa-miR5080-3p mature miRNA
• Sequence: 59 - AAAAGGAUCAUACCGUGACAG - 79
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129