Stem-loop bdi-MIR5069

Accession

MI0017971

Description

Brachypodium distachyon bdi-MIR5069 precursor miRNA

Sequence

cacuuauaucUAGGUUAUUGAUUUGACCAACaaaauauaaguuguguuuugucgguuaaauugaugacuuaugugcuauau
......(((.((((((((((((((((((.((((((((((...)))))))))).)))))))))))))))))).)))......

Structure

cacuua   c                  A          a 
      uau UAGGUUAUUGAUUUGACC ACaaaauaua  
      ||| |||||||||||||||||| |||||||||| g
      gug auucaguaguuaaauugg uguuuugugu  
uauauc   u                  c          u 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

4: 5340628-5340708 [-]

Mature bdi-miR5069

• Accession: MIMAT0020580
• Description: Brachypodium distachyon bdi-miR5069 mature miRNA
• Sequence: 11 - UAGGUUAUUGAUUUGACCAAC - 31
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129