Stem-loop osa-MIR5081

Accession

MI0017972

Description

Oryza sativa osa-MIR5081 precursor miRNA

Literature search

1 open access papers mention osa-MIR5081
(1 sentences)

Sequence

36 reads, 27 reads per million, 2 experiments

auagugacaaacuaucaguuuguugcaacauuagugaucuauuucaguuugcugcaauaauagcguggaaaauuaucacaaaacugcaacuuuuacgugauaugcuacuacaugacaauuguagcagcauaucacguacuguagcagcauaucacguaaaaguuacaguuuuaugauaacuucccaugcuauuguugcaacaaacuaaaauagauaacUAAUUUGUAGCAAAUUGAUAGUuuuaucacua
.((((((.((((((((((((((((((((.((((((.((((((((.((((((.((((((((((((((((.((.((((((.(((((((.(((((((((((((((((((.(((((..((...(((....)))......))..))))).))))))))))))))))))).))))))).)))))).)).)))))))))))))))).)))))).)))))))).))))))))))))))))))))))))))..))))))

Structure

a      -c                    c      g        c      c                a  a      c       c                   a     ug  ---aau   a 
 uaguga  aaacuaucaguuuguugcaa auuagu aucuauuu aguuug ugcaauaauagcgugg aa uuauca aaaacug aacuuuuacgugauaugcu cuaca  ac      ugu g
 ||||||  |||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||| || |||||| ||||||| ||||||||||||||||||| |||||  ||      |||  
 aucacu  uuUGAUAGUUAAACGAUGUU UAAUca uagauaaa ucaaac acguuguuaucguacc uu aauagu uuuugac uugaaaaugcacuauacga gaugu  ug      acg c
-      au                    -      a        a      a                c  c      a       a                   c     ca  cacuau   a 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

Chr7: 16888-17137 [-]

Mature osa-miR5081

• Accession: MIMAT0020581
• Description: Oryza sativa osa-miR5081 mature miRNA
• Sequence: 219 - UAAUUUGUAGCAAAUUGAUAGU - 240
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129