Stem-loop osa-MIR5083

Accession

MI0017974

Description

Oryza sativa osa-MIR5083 precursor miRNA

Literature search

5 open access papers mention osa-MIR5083
(12 sentences)

Sequence

358714 reads, 1857.0 reads per million, 142 experiments

uccuggcaguucuucagauaaucagauuuguccaugagguuucaacuguugcauuccauuguugaguuuuauucuguuugcguuucuguuuguuuuugucauggaucuggcugauuggAGGCUGUGAUGACCAAAAaauaccuaccuauuuucugagggauuccaguccuucugauugauagaaaccaauggauccuucugagccugccaagaucuucagauucuuaguuuuguauucggcuuuuucgauuugucuucguauauugcauucuucuaaaagcaagcaagauucguaacaguugaugggaugauaaccuuucacagaaacuguauguguugacccaaaauucAGACUACAAUUAUCUGAUCAacucagacau
..(((..((((..(((((((((.((.((((....((.((..(((((.(((((((((((((.............(((((.(((..((((((((((((((....((((((((..(((((((((((..((.(((((............(((((.((.(((((((....))))))).))..))))).......))).))..))..))))).)))..))).))))))))...((..(((((..(((...........)))...)))))..)).......))))))))))).)))..))))))))..))))))))).)))).....((((...))))....))))))))).....))))))...)))))))))..)))))))....

Structure

--uc   gc    cu         --c  a    -ucca  a  uu     -------------------u    -         guugaguuuuauu     u   uu   -           ----------------------------------------------ucau        cu   --   -     GU  -U  -   AAAaauaccuac     -u  u       u 
    cug  aguu  ucagauaau   ag uuug     ug gg  ucaac                    guug cauuccauu             cuguu gcg  ucu guuuguuuuug                                                  ggaucugg  gau  ugg AGGCU  GA  GA CCA            cuauu  uc gagggau c
    |||  ||||  |||||||||   || ||||     || ||  |||||                    |||| |||||||||             ||||| |||  ||| |||||||||||                                                  ||||||||  |||  ||| |||||  ||  || |||            |||||  || |||||||  
    gac  ucaA  AGUCUAUUA   UC AGAc     ac cc  aguug                    caau guaggguag             gacaa ugc  aga cgaacgaaaau                                                  cuuagacu  cua  acc uccga  cu  cu ggu            gauag  ag cuuccug c
uaca   --    CU         ACA  -    uuaaa  -  --     uguaugucaaagacacuuuc    a         -----------uu     -   uu   a           cuucuuacguuauaugcuucuguuuagcuuuuucggcuuauguuuugauu        -u   ga   g     gu  uc  a   -----aaccaaa     uu  u       a 

Annotation confidence Low

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1: 41010573-41010952 [-]

Mature osa-miR5083-5p

• Accession: MIMAT0056176
• Description: Oryza sativa osa-miR5083-5p mature miRNA
• Sequence: 119 - AGGCUGUGAUGACCAAAA - 136
• Evidence: experimental ; unknown

Mature osa-miR5083-3p

• Accession: MIMAT0020583
• Description: Oryza sativa osa-miR5083-3p mature miRNA
• Sequence: 351 - AGACUACAAUUAUCUGAUCA - 370
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129