Accession
MI0017974
Description
Oryza sativa
osa-MIR5083 precursor miRNA
Literature search
5 open access papers mention osa-MIR5083
(12 sentences)
(12 sentences)
Sequence
45
reads,
32
reads per million, 2 experiments
uccuggcaguucuucagauaaucagauuuguccaugagguuucaacuguugcauuccauuguugaguuuuauucuguuugcguuucuguuuguuuuugucauggaucuggcugauuggaggcugugaugaccaaaaaauaccuaccuauuuucugagggauuccaguccuucugauugauagaaaccaauggauccuucugagccugccaagaucuucagauucuuaguuuuguauucggcuuuuucgauuugucuucguauauugcauucuucuaaaagcaagcaagauucguaacaguugaugggaugauaaccuuucacagaaacuguauguguugacccaaaauucAGACUACAAUUAUCUGAUCAacucagacau
..(((..((((..(((((((((.((.((((....((.((..(((((.(((((((((((((.............(((((.(((..((((((((((((((....((((((((..(((((((((((..((.(((((............(((((.((.(((((((....))))))).))..))))).......))).))..))..))))).)))..))).))))))))...((..(((((..(((...........)))...)))))..)).......))))))))))).)))..))))))))..))))))))).)))).....((((...))))....))))))))).....))))))...)))))))))..)))))))....
..(((..((((..(((((((((.((.((((....((.((..(((((.(((((((((((((.............(((((.(((..((((((((((((((....((((((((..(((((((((((..((.(((((............(((((.((.(((((((....))))))).))..))))).......))).))..))..))))).)))..))).))))))))...((..(((((..(((...........)))...)))))..)).......))))))))))).)))..))))))))..))))))))).)))).....((((...))))....))))))))).....))))))...)))))))))..)))))))....
Structure
--uc gc cu --c a -ucca a uu -------------------u - guugaguuuuauu u uu - ----------------------------------------------ucau cu -- - gu -u - aaaaauaccuac -u u u
cug aguu ucagauaau ag uuug ug gg ucaac guug cauuccauu cuguu gcg ucu guuuguuuuug ggaucugg gau ugg aggcu ga ga cca cuauu uc gagggau c
||| |||| ||||||||| || |||| || || ||||| |||| ||||||||| ||||| ||| ||| ||||||||||| |||||||| ||| ||| ||||| || || ||| ||||| || |||||||
gac ucaA AGUCUAUUA UC AGAc ac cc aguug caau guaggguag gacaa ugc aga cgaacgaaaau cuuagacu cua acc uccga cu cu ggu gauag ag cuuccug c
uaca -- CU ACA - uuaaa - -- uguaugucaaagacacuuuc a -----------uu - uu a cuucuuacguuauaugcuucuguuuagcuuuuucggcuuauguuuugauu -u ga g gu uc a -----aaccaaa uu u a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].
Genome context
Chr1: 41010573-41010952 [-]
Database links
Mature osa-miR5083
| Accession | MIMAT0020583 |
| Description | Oryza sativa osa-miR5083 mature miRNA |
| Sequence | 351 - AGACUACAAUUAUCUGAUCA - 370 |
| Evidence | not_experimental |
| Database links |
|
References
|
