Stem-loop bdi-MIR5070

Accession

MI0017975

Description

Brachypodium distachyon bdi-MIR5070 precursor miRNA

Literature search

1 open access papers mention bdi-MIR5070
(12 sentences)

Sequence

7264 reads, 58.0 reads per million, 21 experiments

uccUCAGGGUAGCCUUUGACACUGCUuaguucaaccaaaugaacuaaaauuuuaaaaugacacaacuuuuuggaaaacuaguucauuuguuugAACUAAGUAGGGUCAGAGGGUacccugaggg
.((((((((((.((((((((.(((((((((((((.(((((((((((...((((((((.(......).))))))))...))))))))))).))))))))))))).)))))))).)))))))))).

Structure

u          G        A             c           aaa        u ac 
 ccUCAGGGUA CCUUUGAC CUGCUuaguucaa caaaugaacua   uuuuaaaa g  a
 |||||||||| |||||||| ||||||||||||| |||||||||||   |||||||| |   
 ggagucccaU GGAGACUG GAUGAAUCAAguu guuuacuugau   aagguuuu c  c
g          G        G             u           caa        u aa 

Annotation confidence Medium

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

2: 35045123-35045246 [+]

Mature bdi-miR5070-5p

• Accession: MIMAT0056989
• Description: Brachypodium distachyon bdi-miR5070-5p mature miRNA
• Sequence: 4 - UCAGGGUAGCCUUUGACACUGCU - 26
• Evidence: experimental ; unknown

Mature bdi-miR5070-3p

• Accession: MIMAT0020584
• Description: Brachypodium distachyon bdi-miR5070-3p mature miRNA
• Sequence: 94 - AACUAAGUAGGGUCAGAGGGU - 114
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129