Stem-loop bdi-MIR5185a

Accession

MI0018158

Description

Brachypodium distachyon bdi-MIR5185a precursor miRNA

Literature search

1 open access papers mention bdi-MIR5185a
(1 sentences)

Sequence

ggugcaaacuggaucccacgaaagucccguUUCUAGUUCAUUUUUCAAAUCuucuauucaaaauuuugcucaaaauuugaauaggagaUUUGAGAAUUGAACUAGAAGCgggacuuucgcgggaugccguuugcacccuuaauuuuaacuuga
(((((((((.(.(((((.((((((((((((((((((((((.(((((((((((((((((((((.((((....))))))))))))))))))))))))).)))))))))))))))))))))).))))).).)))))))))................

Structure

----------------         u g     a                      U                     a    g 
                ggugcaaac g auccc cgaaagucccguUUCUAGUUCA UUUUCAAAUCuucuauucaaa uuuu c
                ||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||  
                ccacguuug c uaggg gcuuucagggCGAAGAUCAAGU AAGAGUUUagaggauaaguuu aaaa u
aguucaauuuuaauuc         c g     c                      U                     -    c 

Annotation confidence Not enough data

Genome context

2: 41735710-41735862 [+]

Mature bdi-miR5185a-5p

• Accession: MIMAT0020734
• Description: Brachypodium distachyon bdi-miR5185a-5p mature miRNA
• Sequence: 31 - UUCUAGUUCAUUUUUCAAAUC - 51
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5185a-3p

• Accession: MIMAT0027086
• Description: Brachypodium distachyon bdi-miR5185a-3p mature miRNA
• Sequence: 89 - UUUGAGAAUUGAACUAGAAGC - 109
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443