Stem-loop bdi-MIR5054

Accession

MI0018238

Description

Brachypodium distachyon bdi-MIR5054 precursor miRNA

Sequence

ccuccgugguugaugcguuguggauugagaacagcauggucaagaagaucguagaucugaugcacuucuUCCCCACGGUCGGCGCCAaugacgagga
((((.((.((((.((((((((((...(((((..((((((((..((...))...))))..))))..)))))..)))))).).))).)))).)))))).

Structure

-    c  g    a   - -      auu     ca    --    -aa  a 
 ccuc gu guug ugc g uugugg   gagaa  gcau  gguc   ga  
 |||| || |||| ||| | ||||||   |||||  ||||  ||||   || g
 ggag ca uaAC GCG C GGCACC   Uucuu  cgua  cuag   cu  
a    -  g    C   G U      -CC     ca    gu    aug  a 

Annotation confidence Not enough data

Genome context

3: 21161853-21161949 [+]

Mature bdi-miR5054

• Accession: MIMAT0020763
• Description: Brachypodium distachyon bdi-miR5054 mature miRNA
• Sequence: 70 - UCCCCACGGUCGGCGCCA - 87
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129