Stem-loop mtr-MIR2643b

Accession

MI0018354

Description

Medicago truncatula mtr-MIR2643b precursor miRNA

Sequence

351413 reads, 738.0 reads per million, 111 experiments

guccuugaauucuCUAAUCUCUGUUCCCAAUUAcacuuaauccaugaaaagaucaagugagUUUGGGAUCAGAAAUUAGAGauaucaauacu
....((((..((((((((.((((.((((((...(((((.(((........))).)))))...)))))).)))).))))))))..))))....

Structure

gucc    au        C    U      UUA     a   cau 
    uuga  ucuCUAAU UCUG UCCCAA   cacuu auc   g
    ||||  |||||||| |||| ||||||   ||||| |||    
    aacu  aGAGAUUA AGAC AGGGUU   gugaa uag   a
ucau    au        A    U      Uga     c   aaa 

Annotation confidence High

Genome context

chr5: 41256981-41257072 [-]

Mature mtr-miR2643b-5p

• Accession: MIMAT0021249
• Description: Medicago truncatula mtr-miR2643b-5p mature miRNA
• Sequence: 14 - CUAAUCUCUGUUCCCAAUUA - 33
• Evidence: experimental ; Illumina [2]

Mature mtr-miR2643b-3p

• Accession: MIMAT0021250
• Description: Medicago truncatula mtr-miR2643b-3p mature miRNA
• Sequence: 62 - UUUGGGAUCAGAAAUUAGAG - 81
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367