Stem-loop mtr-MIR2111f

Accession

MI0018360

Description

Medicago truncatula mtr-MIR2111f precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111f
(9 sentences)

Sequence

103989 reads, 733.0 reads per million, 111 experiments

uaaggauagggUAAUCUGCAUCCUGAGGUUUAgaacaauaguugguuaauuuccuuaaaaagaaaauagucgcguaauuguuucuaAGCCUUGGAGUGCAGAUUAUCuuuuccuua
((((((.((((((((((((((.((((((((((((((((((..((((((.((((........)))).))))))..).)))).))))))))))))).)))))))))))))).))))))

Structure

      u              C             -    - gu      a    cuu 
uaagga agggUAAUCUGCAU CUGAGGUUUAgaa caau a  ugguua uuuc   a
|||||| |||||||||||||| ||||||||||||| |||| |  |||||| ||||    
auuccu uuCUAUUAGACGUG GGUUCCGAaucuu guua u  gcugau aaag   a
      u              A             u    a gc      a    aaa 

Annotation confidence High

Genome context

chr7: 16671474-16671589 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2111f

Mature mtr-miR2111f-5p

• Accession: MIMAT0021256
• Description: Medicago truncatula mtr-miR2111f-5p mature miRNA
• Sequence: 12 - UAAUCUGCAUCCUGAGGUUUA - 32
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR2111f-3p

• Accession: MIMAT0055126
• Description: Medicago truncatula mtr-miR2111f-3p mature miRNA
• Sequence: 87 - AGCCUUGGAGUGCAGAUUAUC - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367