Stem-loop isc-mir-5306

Accession

MI0018485

Description

Ixodes scapularis isc-mir-5306 precursor miRNA

Literature search

1 open access papers mention isc-mir-5306
(1 sentences)

Sequence

gccggauuaccagcuugccuggggaggagcaccgcguguuacaacuucguagggagaauggccggAGAGUAUCACGUGACGCUCCUUccucggcaaguggcagcgucgcc
(((((....)).(((((((.((((((((((..((((((.(((..((((...((........)))))).))).))))))..)))))))))).)))))))))).........

Structure

---------   ggauuacca       u          ac      u   aa    gua  gag 
         gcc         gcuugcc ggggaggagc  cgcgug uac  cuuc   gg   a
         |||         ||||||| ||||||||||  |||||| |||  ||||   ||    
         cgg         ugaacgg uccUUCCUCG  GUGCAC AUG  GAgg   cc   a
ccgcugcga   ---------       c          CA      U   -A    ---  ggu 

Annotation confidence Not enough data

Genome context

DS717196: 247001-247110 [+]

Mature isc-miR-5306

• Accession: MIMAT0021376
• Description: Ixodes scapularis isc-miR-5306 mature miRNA
• Sequence: 66 - AGAGUAUCACGUGACGCUCCUU - 87
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328