Stem-loop isc-mir-5308

Accession

MI0018487

Description

Ixodes scapularis isc-mir-5308 precursor miRNA

Literature search

1 open access papers mention isc-mir-5308
(4 sentences)

Sequence

cuacgcaauugcaccaaaacccucUCUGUGCUGUGGAGGUAAUAUAUagcugucaacauauauacguccaaagcacugaggggguuuuacucacucaucaucgag
....((....))...(((((((((((.(((((.((((.(((.(((((..........)))))))).)))).))))).))))))))))).....(((......)))

Structure

--cuacgcaauugcacc           U     G    G   A     agcu 
                 aaaacccucUC GUGCU UGGA GUA UAUAU    g
                 ||||||||||| ||||| |||| ||| |||||     
                 uuuugggggag cacga accu cau auaua    u
gagcuacuacucacuca           u     a    g   -     caac 

Annotation confidence Not enough data

Genome context

DS911923: 134615-134719 [-]

Mature isc-miR-5308

• Accession: MIMAT0021378
• Description: Ixodes scapularis isc-miR-5308 mature miRNA
• Sequence: 25 - UCUGUGCUGUGGAGGUAAUAUAU - 47
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328