Stem-loop isc-mir-5309

Accession

MI0018488

Description

Ixodes scapularis isc-mir-5309 precursor miRNA

Literature search

1 open access papers mention isc-mir-5309
(1 sentences)

Sequence

gagaaggaaagcgcccggaguuccgagguuuccacggcgcauccgccucuaggcucggcagccggCAAUGCCCAUGGAAACCCCGAAucuccgguuagcuccaucaacgg
..((.(((..((..(((((((((.(.((((((((.((.((((..(((....((((....))))))).)))))).))))))))).))).))))))...))))).)).....

Structure

---ga  a   aa  -gc      -   c a        c  c    cc   ucua    c 
     ga gga  gc   ccggag uuc g gguuucca gg gcau  gcc    ggcu g
     || |||  ||   |||||| ||| | |||||||| || ||||  |||    ||||  
     cu ccu  cg   ggccuc AAG C CCAAAGGU CC CGUA  Cgg    ccga g
ggcaa  a   --  auu      u   C -        A  -    -A   ----    c 

Annotation confidence Not enough data

Genome context

DS745599: 24786-24895 [-]

Mature isc-miR-5309

• Accession: MIMAT0021379
• Description: Ixodes scapularis isc-miR-5309 mature miRNA
• Sequence: 66 - CAAUGCCCAUGGAAACCCCGAA - 87
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328