Stem-loop isc-mir-5314

Accession

MI0018494

Description

Ixodes scapularis isc-mir-5314 precursor miRNA

Literature search

1 open access papers mention isc-mir-5314
(2 sentences)

Sequence

gaaacaacugcggcucggguucaucauaaggauaucaucaauauuucgcaauggccaaUAUAGAUGAUGUCUUCAUGAUGCuccggaguuggucaaucacgcc
..........((((((.((..((((((.(((((((((((.(((((..((....)).))))).))))))))))).))))))..)).))))))............

Structure

--gaaacaacug      g  uu      a           a     uc  a 
            cggcuc gg  caucau aggauaucauc auauu  gc a
            |||||| ||  |||||| ||||||||||| |||||  ||  
            guugag cc  GUAGUA UUCUGUAGUAG UAUaa  cg u
ccgcacuaacug      g  uC      C           A     -c  g 

Annotation confidence Not enough data

Genome context

DS954809: 999151-999253 [-]

Mature isc-miR-5314

• Accession: MIMAT0021385
• Description: Ixodes scapularis isc-miR-5314 mature miRNA
• Sequence: 59 - UAUAGAUGAUGUCUUCAUGAUGC - 81
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328