Stem-loop isc-mir-5315

Accession

MI0018495

Description

Ixodes scapularis isc-mir-5315 precursor miRNA

Literature search

1 open access papers mention isc-mir-5315
(1 sentences)

Sequence

cgggaacucgggugcgagggugAACACAACAUCCGGACAAGCACgugcgcguuucauguucuugccccgaaguugucuccgccuucaaaacccgcaagcuacg
..((....(((((..(((((((...(((((.((.((.((((.(((((.......))))).)))).)).)).)))))...)))))))...)))))....))...

Structure

-cg  aacu     -gc       AAC     A  C  A    C     cg 
   gg    cgggu   gagggug   ACAAC UC GG CAAG ACgug  c
   ||    |||||   |||||||   ||||| || || |||| |||||  g
   uc    gccca   cuuccgc   uguug ag cc guuc uguac  u
gca  gaac     aaa       cuc     a  c  c    u     uu 

Annotation confidence Not enough data

Genome context

DS734036: 1283486-1283588 [+]

Mature isc-miR-5315

• Accession: MIMAT0021386
• Description: Ixodes scapularis isc-miR-5315 mature miRNA
• Sequence: 23 - AACACAACAUCCGGACAAGCAC - 44
• Evidence: not_experimental

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328