Stem-loop rmi-mir-5318

Accession

MI0018499

Description

Rhipicephalus microplus rmi-mir-5318 precursor miRNA

Literature search

1 open access papers mention rmi-mir-5318
(1 sentences)

Sequence

accuuauauagcccacaaacaaugccUUGUAUAACUGCAGAAGACUUUUCUCCgaagggccccaucucaguccugcuauaacacgaagaacauacacaaaacugauuaguuuguuuccgca
............................(((..((((.(((.(.((((((...))))))...).)))))))..))).......((..(((((.((.............)).))))).))..

Structure

-----------------accuuauauagcccacaaacaaugccUU   UA    C   A --A      U 
                                             GUA  ACUG AGA G   CUUUUC  
                                             |||  |||| ||| |   |||||| C
                                             cgu  ugac ucu c   gggaag  
acgccuuuguuugauuagucaaaacacauacaagaagcacaauau   cc    -   a ccc      C 

Annotation confidence Low

Genome context

Unknown

Mature rmi-miR-5318

• Accession: MIMAT0021390
• Description: Rhipicephalus microplus rmi-miR-5318 mature miRNA
• Sequence: 27 - UUGUAUAACUGCAGAAGACUUUUCUCC - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328