miRBase entry: rmi-mir-5323

Stem-loop rmi-mir-5323


Accession
MI0018505
Description
Rhipicephalus microplus rmi-mir-5323 precursor miRNA


Sequence

cacggccccgaguugcauagguggcagcagggagacgaugacgucacccagauguggcacgugugggcGAUGUGGCUCUUUGACGGAUAGucgcuggugcaagggcggcggg
..(.(((((...((((((.((((((..(((((((....(.(((((.((((.((((...)))).)))).))))).)))))))).......)))))).)))))).)).))).).

Structure
ca g   -  gag      a      -----ag       acga g     a    g    g 
  c gcc cc   uugcau gguggc       cagggag    u acguc ccca augu  
  | ||| ||   |||||| ||||||       |||||||    | ||||| |||| |||| g
  g cgg gg   aacgug ucgcuG       GUUUCUC    G UGUAG gggu ugca  
-g g   c  --g      g      AUAGGCA       ---- G     c    g    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5323

Accession MIMAT0021396
Description Rhipicephalus microplus rmi-miR-5323 mature miRNA
Sequence 69 - GAUGUGGCUCUUUGACGGAUAG - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328