miRBase entry: rmi-mir-5326

Stem-loop rmi-mir-5326


Accession
MI0018508
Description
Rhipicephalus microplus rmi-mir-5326 precursor miRNA


Sequence

gguauaacccugucgugggaacugguuuuugugagcacuguucggaagaacuucaagaaaaaugggggcauUUGAACAGGCUUAGCAAACAAAUGACAauccgcuuugagacagcugugaca
(((...)))((((((((((...(.((((((((((((.(((((((((.(..(((((.......))))).).)))))))))))))).)))..)))).)...))))).....)))))........

Structure
gguauaacc     -----     aac g    --   -     a         a aa     ag 
         cuguc     guggg   u guuu  uug ugagc cuguucgga g  cuuca  a
         |||||     |||||   | ||||  ||| ||||| ||||||||| |  |||||  a
         gacag     cgccu   A UAAA  AAC AUUCG GACAAGUUu c  ggggu  a
-acaguguc     aguuu     aAC G    CA   G     -         a -g     aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5326

Accession MIMAT0021399
Description Rhipicephalus microplus rmi-miR-5326 mature miRNA
Sequence 72 - UUGAACAGGCUUAGCAAACAAAUGACA - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328