Stem-loop rmi-mir-5331

Accession

MI0018513

Description

Rhipicephalus microplus rmi-mir-5331 precursor miRNA

Literature search

1 open access papers mention rmi-mir-5331
(1 sentences)

Sequence

ugcacgcugaagcgugaacgaaguggcguguccaguugccugcgccggucccgcaacugugagucgcugggaucagugaggcugcagauuggggcagcacaggUCCAGAAAGCAUGACUGCGGCGAUGAGggcguaggu
.((((((((...((....))...))))))))......(((((((((.((((((((..((((.....((((.(((.(((..(((.((...)).)))..))).)))))))....))))..))))).)))...)))))))))

Structure

ugcacgcugaagcgugaacgaaguggcguguccaguu         --g   -     ac    agucg    g   a   ag   g  g 
                                     gccugcgcc   guc ccgca  ugug     cugg auc gug  gcu ca  
                                     |||||||||   ||| |||||  ||||     |||| ||| |||  ||| || a
                                     uggaugcgg   UAG GGCGU  GUAC     GACC Ugg cac  cgg gu  
-------------------------------------         GAG   C     CA    -GAAA    -   a   ga   g  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rmi-miR-5331

• Accession: MIMAT0021404
• Description: Rhipicephalus microplus rmi-miR-5331 mature miRNA
• Sequence: 104 - UCCAGAAAGCAUGACUGCGGCGAUGAG - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328