Stem-loop rmi-mir-5333

Accession

MI0018515

Description

Rhipicephalus microplus rmi-mir-5333 precursor miRNA

Sequence

gcacgaguuacuucugcguuugaccggauguguUGUGAUUACAGCAGCUCUUUCGGUgcguguaagcagugcggaaagcuguggcagugcaaugguguacggugaagcgcagcga
.............((((((((.((((....(((((((......((((((.(((((.(((......)))...))))))))))).....))))))).....)))).))))))))...

Structure

gcacgaguuacuu        g    -gaug       AUUACA      C     --G   gu 
             cugcguuu accg     uguUGUG      GCAGCU UUUCG   Ugc  g
             |||||||| ||||     |||||||      |||||| |||||   |||   
             gacgcgaa uggc     guaacgu      ugucga aaggc   acg  u
----------agc        g    augug       -gacgg      -     gug   aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature rmi-miR-5333

• Accession: MIMAT0021406
• Description: Rhipicephalus microplus rmi-miR-5333 mature miRNA
• Sequence: 34 - UGUGAUUACAGCAGCUCUUUCGGU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328