miRBase entry: rmi-mir-5333

Stem-loop rmi-mir-5333


Accession
MI0018515
Description
Rhipicephalus microplus rmi-mir-5333 precursor miRNA


Sequence

gcacgaguuacuucugcguuugaccggauguguUGUGAUUACAGCAGCUCUUUCGGUgcguguaagcagugcggaaagcuguggcagugcaaugguguacggugaagcgcagcga
.............((((((((.((((....(((((((......((((((.(((((.(((......)))...))))))))))).....))))))).....)))).))))))))...

Structure
gcacgaguuacuu        g    -gaug       AUUACA      C     --G   gu 
             cugcguuu accg     uguUGUG      GCAGCU UUUCG   Ugc  g
             |||||||| ||||     |||||||      |||||| |||||   |||   
             gacgcgaa uggc     guaacgu      ugucga aaggc   acg  u
----------agc        g    augug       -gacgg      -     gug   aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5333

Accession MIMAT0021406
Description Rhipicephalus microplus rmi-miR-5333 mature miRNA
Sequence 34 - UGUGAUUACAGCAGCUCUUUCGGU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328