Stem-loop rmi-mir-5334

Accession

MI0018516

Description

Rhipicephalus microplus rmi-mir-5334 precursor miRNA

Literature search

1 open access papers mention rmi-mir-5334
(1 sentences)

Sequence

cuugugaagccuucuucgguuuggccggcuggcucuugaguaaccacguccccagauucugugucugcuuuggcUGUUGGUUCAUCACCACCAGUCGGUGUGgcuguaccuguugaagcuucugggu
.....(((((.(((..((((.(((((((((((((..(((..(((((((.((.(((((.....)))))....)).)).)))))..))).....))))))).)))))).))).)..)))))))).....

Structure

cuugu     c   uu -   u      -       ---cu   gu     -  u  ---c     u 
     gaagc uuc  c ggu uggccg gcuggcu     uga  aacca cg cc    cagau c
     ||||| |||  | ||| |||||| |||||||     |||  ||||| || ||    ||||| u
     cuucg aag  g cca gucgGU UGGCUGA     ACU  UUGGU GU gg    gucug g
ugggu     -   uu u   u      G       CCACC   AC     U  c  uuuc     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rmi-miR-5334

• Accession: MIMAT0021407
• Description: Rhipicephalus microplus rmi-miR-5334 mature miRNA
• Sequence: 75 - UGUUGGUUCAUCACCACCAGUCGGUGUG - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328