Stem-loop rmi-mir-5336

Accession

MI0018518

Description

Rhipicephalus microplus rmi-mir-5336 precursor miRNA

Literature search

1 open access papers mention rmi-mir-5336
(1 sentences)

Sequence

ucacgucUUUGAUCUCAUUCGGCGCGGUUUCCUCgagaagcacagaaagaacuugccuguugaggagucgcaaguuagaugcagggucuucgggcauaaacagcauggugugcggccaccgcuguggugca
...((.....(((((((((.((((((..((((((((.(.(((.((......))))).).)))))))).)))..))).))))..)))))..)).((((..(((((..((((......))))))))).)))).

Structure

------------------------------------uca  ucUUU     --    C   --   GU        g a   c  aa 
                                       cg     GAUCU  CAUU GGC  GCG  UUCCUCga a gca ag  a
                                       ||     |||||  |||| |||  |||  |||||||| | ||| ||   
                                       gc     cuggg  guag uug  cgc  gaggaguu u cgu uc  g
acguggugucgccaccggcgugugguacgacaaauacgg  ---uu     ac    a   aa   -u        g c   -  aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature rmi-miR-5336

• Accession: MIMAT0021409
• Description: Rhipicephalus microplus rmi-miR-5336 mature miRNA
• Sequence: 8 - UUUGAUCUCAUUCGGCGCGGUUUCCUC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21699734
   Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
   Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
   BMC Genomics (2011) 12:328