Stem-loop gma-MIR5037b

Accession

MI0018624

Description

Glycine max gma-MIR5037b precursor miRNA

Literature search

1 open access papers mention gma-MIR5037b
(3 sentences)

Sequence

7865 reads, 36.0 reads per million, 158 experiments

caguAACCCUCAAAGGCUUCCUAGacuccauguuacggucaaaucaauuaaucguugauuaggaauaauuaagaguuuCGGAAGUAACUUUGGGGGUUAACUG
(((((((((((((((((((((.((((((...((((...((.(((((((.....)))))))..)).))))...)))))).))))))..))))))))))).))))

Structure

    -           --      U      cau    cgg  -a       u 
cagu AACCCUCAAAG  GCUUCC AGacuc   guua   uc  aaucaau a
|||| |||||||||||  |||||| ||||||   ||||   ||  ||||||| a
GUCA UUGGGGGUUUC  UGAAGG uuugag   uaau   ag  uuaguug u
    A           AA      C      aau    --a  ga       c 

Annotation confidence Medium

Genome context

chr18: 57328532-57328634 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5037b

Mature gma-miR5037b-5p

• Accession: MIMAT0021605
• Description: Glycine max gma-miR5037b-5p mature miRNA
• Sequence: 5 - AACCCUCAAAGGCUUCCUAG - 24
• Evidence: experimental ; Illumina [1]

Mature gma-miR5037b-3p

• Accession: MIMAT0054222
• Description: Glycine max gma-miR5037b-3p mature miRNA
• Sequence: 79 - CGGAAGUAACUUUGGGGGUUAACUG - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307