Stem-loop gma-MIR5370

Accession

MI0018626

Description

Glycine max gma-MIR5370 precursor miRNA

Sequence

49868 reads, 153.0 reads per million, 176 experiments

guuugcaCUAAAGAUUGUCCAAAAGGAAuauuguuuuaugcagaagacaaauuacaucggauaagaaaaaucacaccacauaauugcugcauugcuuuagaucucuauuucugcauaaaacaauauuccUUUUGGACAAUCUUUAGUGCAaac
(((((((((((((((((((((((((((((((((((((((((((((...........((......))...................((......))..(((....))).)))))))))))))))))))))))))))))))))))))))))))))

Structure

                                             gacaaauuacaucggauaagaaaaaucacaccacauaauugcugcauugcuu   a 
guuugcaCUAAAGAUUGUCCAAAAGGAAuauuguuuuaugcagaa                                                    uag u
|||||||||||||||||||||||||||||||||||||||||||||                                                    |||  
caaACGUGAUUUCUAACAGGUUUUccuuauaacaaaauacgucuu                                                    auc c
                                             ---------------------------------------------------u   u 

Annotation confidence Medium

Genome context

chr14: 6870104-6870256 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5370

Mature gma-miR5370-5p

• Accession: MIMAT0021607
• Description: Glycine max gma-miR5370-5p mature miRNA
• Sequence: 8 - CUAAAGAUUGUCCAAAAGGAA - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR5370-3p

• Accession: MIMAT0054224
• Description: Glycine max gma-miR5370-3p mature miRNA
• Sequence: 130 - UUUUGGACAAUCUUUAGUGCA - 150
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307