Stem-loop gma-MIR5379

Accession

MI0018638

Description

Glycine max gma-MIR5379 precursor miRNA

Sequence

15085 reads, 97.0 reads per million, 172 experiments

cacguCAUCACAGACAUCAUAAUGAAUgauuuucauguuuauauuuaaauuaguuguuauauguuugucauuugaauuugacacuuaauuuguucaaauuuauacuuacauacaacaaauuuaaacagagacAUGAAAAUCAUUCAUUAUGAUAUCcgugaugacgug
(((((((((((.((.(((((((((((((((((((((((((...((((((((.(((((...((((..((....(((((((((.((.......))))))))))).))..))))))))).))))))))...))))))))))))))))))))))))).)).)))))))))))

Structure

           A  C                         aua        a     uau    uu  cauu         c  uu 
cacguCAUCAC GA AUCAUAAUGAAUgauuuucauguuu   uuuaaauu guugu   augu  gu    ugaauuuga ac  a
||||||||||| || |||||||||||||||||||||||||   |||||||| |||||   ||||  ||    ||||||||| ||  a
gugcaguagug CU UAGUAUUACUUACUAAAAGUAcaga   aaauuuaa caaca   uaca  ca    auuuaaacu ug  u
           c  A                         gac        a     ---    uu  ---u         -  uu 

Annotation confidence Low

Genome context

Unknown

Mature gma-miR5379-5p

• Accession: MIMAT0054234
• Description: Glycine max gma-miR5379-5p mature miRNA
• Sequence: 6 - CAUCACAGACAUCAUAAUGAAU - 27
• Evidence: experimental ; unknown

Mature gma-miR5379-3p

• Accession: MIMAT0021620
• Description: Glycine max gma-miR5379-3p mature miRNA
• Sequence: 133 - AUGAAAAUCAUUCAUUAUGAUAUC - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307