Stem-loop gma-MIR5379

Accession

MI0018638

Description

Glycine max gma-MIR5379 precursor miRNA

Sequence

cacgucaucacagacaucauaaugaaugauuuucauguuuauauuuaaauuaguuguuauauguuugucauuugaauuugacacuuaauuuguucaaauuuauacuuacauacaacaaauuuaaacagagacAUGAAAAUCAUUCAUUAUGAUAUCcgugaugacgug
(((((((((((.((.(((((((((((((((((((((((((...((((((((.(((((...((((..((....(((((((((.((.......))))))))))).))..))))))))).))))))))...))))))))))))))))))))))))).)).)))))))))))

Structure

           a  c                         aua        a     uau    uu  cauu         c  uu 
cacgucaucac ga aucauaaugaaugauuuucauguuu   uuuaaauu guugu   augu  gu    ugaauuuga ac  a
||||||||||| || |||||||||||||||||||||||||   |||||||| |||||   ||||  ||    ||||||||| ||  a
gugcaguagug CU UAGUAUUACUUACUAAAAGUAcaga   aaauuuaa caaca   uaca  ca    auuuaaacu ug  u
           c  A                         gac        a     ---    uu  ---u         -  uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature gma-miR5379

• Accession: MIMAT0021620
• Description: Glycine max gma-miR5379 mature miRNA
• Sequence: 133 - AUGAAAAUCAUUCAUUAUGAUAUC - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307